WAVE1


# July and September 2009 release (Illumina 610Quad)
# These data are preprocessed and qc controled as regards subjects and SNPs
# preprocessing : all files plink formated (binary)
# qc_subjects : procedure described in pdf files
# qc_genetics : thresh MAF=0.05, HWEpval=0.001, GENO=0.05 (on 620 subj.)
#
#
# all_subjects_all_snps_wave1.zip
# 705 subjects and 582892 SNPs
#
# qc_subjects_all_snps_wave1.zip
# 620 subjects and 582892 SNPs
#
# qc_subjects_nonqc_genetics_only_autosomes_wave1.zip
# 620 subjects and 567589 SNP from chrom 1-22
#
# qc_subjects_nonqc_genetics_only_autosomes_X_wave1.zip
# 620 subjects and 582574 SNP from chrom 1-22 + 23
#
# qc_subjects_qc_genetics_only_autosomes_wave1.zip
# 620 subjects and 501060 SNP from chrom 1-22
#
# qc_subjects_qc_genetics_only_autosomes_X_wave1.zip
# 620 subjects and 513257 SNP from chrom 1-22 + 23
# (in mars 2010 the gender missed for 23 subjects and maf for the
# X chrom was inferred on the same number of individual !
# This is the reason for the oldvalues :
# 620 subjects and 513174 SNP from chrom 1-22 + 23)
# qc_subjects_qc_genetics_all_snp_wave1.zip
# 620 subjects and 513300 SNPs

WAVE2

# April 2011 release (Illumina 660w)
# These data are preprocessed and qc controled as regards subjects and SNPs
# preprocessing : all files plink formated (binary)
# qc_subjects : procedure described pdf files
# qc_genetics : thresh MAF=0.05, HWEpval=0.001, GENO=0.05 (on 868 subj.)
#
#
# all_subjects_all_snps_wave2.zip
# 993 subjects and 557,124 SNPs
#
# qc_subjects_all_snps_wave2.zip
# 868 subjects and 557,124 SNPs
#
# qc_subjects_nonqc_genetics_only_autosomes_wave2.zip
# 868 subjects and 543,732 SNP from chrom 1-22
#
# qc_subjects_nonqc_genetics_only_autosomes_X_wave2.zip
# 868 subjects and 557,105 SNP from chrom 1-22 + 23
#
# qc_subjects_qc_genetics_all_snps_wave2.zip
# 868 subjects and 497,323 SNP from chrom 1-22
#
# qc_subjects_qc_genetics_only_autosomes_wave2.zip
# 868 subjects and 485,901 SNP from chrom 1-22
#
# qc_subjects_qc_genetics_only_autosomes_X_wave2.zip
# 868 subjects and 497,311 SNP from chrom 1-22 + 23

WAVE3

# July 2011 release (Illumina 660w)
#
# These data are preprocessed and qc controled as regards subjects and SNPs
# preprocessing : all files plink formated (binary)
# qc_subjects : procedure described in the pdf files
# qc_genetics : thresh MAF=0.05, HWEpval=0.001, GENO=0.05 (on 351 subj.)
#
#
# all_subjects_all_snps_wave3.zip
# 393 subjects and 557,124 SNPs
#
# qc_subjects_all_snps_wave3.zip
# 351 subjects and 557,124 SNPs
#
# qc_subjects_nonqc_genetics_only_autosomes_wave3.zip
# 351 subjects and 543,732 SNP from chrom 1-22
#
# qc_subjects_nonqc_genetics_only_autosomes_X_wave3.zip
# 351 subjects and 557,105 SNP from chrom 1-22 + 23
#
# qc_subjects_qc_genetics_all_snps_wave3.zip
# 351 subjects and 491,248 SNP
#
# qc_subjects_qc_genetics_only_autosomes_wave3.zip
# 351 subjects and 480,449 SNP from chrom 1-22
#
# qc_subjects_qc_genetics_only_autosomes_X_wave3.zip
# 351 subjects and 491,236 SNP from chrom 1-22 + 23