Psytools, Dawba and Cantab data
| WP4_SOP_Annex_instruments_variable_names.pdf | Maren Struve | 2012-04-12 |
| This document describes the BL and FU1 instruments and variable names. It can also be found in millarium as WP4_SOP_Annex.doc | ||
| SOP_Annex_FU2_16.06.2017.pdf | Frauke Nees | 2018-03-25 |
| Describes the instruments and their variable names in FU2. | ||
| SOP_Annex_IMAGEN_FU3_v8_.pdf | Frauke Nees | 2020-10-10 |
| Describes the instruments and their variable names in FU3. | ||
| IMAGEN_Instruments_BLtoFU3.pdf | Erin Quinlan | 2019-03-13 |
| Evolution of Imagen instruments over time points from BL to FU3. | ||
We have stored in Github:
- the Python scripts that download from Delosis servers and de-identify data,
- the R script that calls the Delosis R library for Psytools data derivation.
Imaging data
| fmri_current_v1.pdf | Benjamin Thyreau | 2010-09-24 |
| fmri model setting and contrasts list | ||
| processings_faq.pdf | Benjamin Thyreau | 2011-01-13 |
| FAQ on imaging data processings | ||
| DTIpreprocessing.pdf | Hervé Lemaître | 2018-01-31 |
| DTI processings details and authorships | ||
We have stored in Github:
- FU2/FU3 MRI protocols,
- scripts and basic documentation for imaging data pre-processing.
Obsolete documentation?
Documentation previously published on the old Imagen XNAT server, mostly inherited from the initial database team and written for baseline (BL) and follow up 1 (FU1) :
| QCgenotypeBatch12-1.pdf | Jean-Baptiste Poline | 2010-10-18 |
| This document describes the quality check on the SNP data ie which subjects were removed and why. | ||
| Database_handling_Berlin_workshop_slides.pdf | Alexis Barbot | 2010-11-03 |
| Slides of the presentation done at Berlin workshop on Database Handling (28th of October 2010) | ||
| Gender_and_age_inclusion_schema.pdf | Alexis Barbot | 2011-03-08 |
| Some explanations regarding age and gender, where does it come from and how can it be missing. | ||
| Genetic_qc_readme.txt | Alexis Barbot | 2011-07-28 |
| Description of the various files from the genetic qc. | ||
| parzen_outlier_scores.txt | Alexis Barbot | 2012-04-10 |
| Details about the fMRI Contrasts Parzen outlier scores | ||
| freesurfer_QC.rst | Jean-Baptiste Poline | 2012-04-25 |
| A description of the freesurfer Quality Check data | ||
| check_estimable.py | Jean-Baptiste Poline | 2012-08-01 |
| A python script to help finding the non estimable contrast. | ||
| R_check_estimable.rc | Jean-Baptiste Poline | 2012-08-01 |
| An R extract to help finding the non estimable contrasts. | ||
| IMAGEN gene expression_SD.docx | Barbara Ruggeri & Sylvane Desrivières | 2015-06-18 |
| Gene expression analyses in IMAGEN samples | ||
| Methylation protocol_final.pdf | Sylvane Desrivières et al. | 2015-06-25 |
| DNA methylation analyses in IMAGEN samples | ||
| IMAGEN_DATA_ACCESS_2015-10-08.pdf | Dimitri Papadopoulos | 2015-10-08 |
| To access BL, FU1 and FU2 data, use the new Imagen V2 server. The legacy XNAT server is not available anymore. | ||